microbiome signatures definitions

Lipocalin-2 (LCN2/NGAL) is an inflammation-responsive protein central to microbiome–host interactions. It limits bacterial growth by binding iron-scavenging siderophores and is measurable in stool as a noninvasive marker of intestinal inflammation, including IBD.

Lipocalin-2

Researched by:

  • Dr. Umar ID
    Dr. Umar

    User avatarClinical Pharmacist and Clinical Pharmacy Master’s candidate focused on antibiotic stewardship, AI-driven pharmacy practice, and research that strengthens safe and effective medication use. Experience spans digital health research with Bloomsbury Health (London), pharmacovigilance in patient support programs, and behavioral approaches to mental health care. Published work includes studies on antibiotic use and awareness, AI applications in medicine, postpartum depression management, and patient safety reporting. Developer of an AI-based clinical decision support system designed to enhance antimicrobial stewardship and optimize therapeutic outcomes.

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January 10, 2026

Lipocalin-2 (LCN2/NGAL) is an inflammation-responsive protein central to microbiome–host interactions. It limits bacterial growth by binding iron-scavenging siderophores and is measurable in stool as a noninvasive marker of intestinal inflammation, including IBD.

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Researched by:

  • Dr. Umar ID
    Dr. Umar

    User avatarClinical Pharmacist and Clinical Pharmacy Master’s candidate focused on antibiotic stewardship, AI-driven pharmacy practice, and research that strengthens safe and effective medication use. Experience spans digital health research with Bloomsbury Health (London), pharmacovigilance in patient support programs, and behavioral approaches to mental health care. Published work includes studies on antibiotic use and awareness, AI applications in medicine, postpartum depression management, and patient safety reporting. Developer of an AI-based clinical decision support system designed to enhance antimicrobial stewardship and optimize therapeutic outcomes.

    Read More

Last Updated: 2026-01-10

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

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Dr. Umar

Clinical Pharmacist and Clinical Pharmacy Master’s candidate focused on antibiotic stewardship, AI-driven pharmacy practice, and research that strengthens safe and effective medication use. Experience spans digital health research with Bloomsbury Health (London), pharmacovigilance in patient support programs, and behavioral approaches to mental health care. Published work includes studies on antibiotic use and awareness, AI applications in medicine, postpartum depression management, and patient safety reporting. Developer of an AI-based clinical decision support system designed to enhance antimicrobial stewardship and optimize therapeutic outcomes.

Overview

Lipocalin-2 (LCN2), also called neutrophil gelatinase-associated lipocalin (NGAL), is a small secreted protein that rises rapidly during mucosal inflammation and infection and can be measured in blood, urine, and stool.[1][2][3] In microbiome medicine, LCN2 is clinically useful because it reflects active epithelial and neutrophil-driven intestinal inflammation and simultaneously participates in nutrient control of microbes, making it both a biomarker and an effector of host defense.[4][5]

How LCN2 shapes microbial ecology by starving bacteria of iron

Many gut bacteria require iron to replicate. During inflammation, bacteria often release siderophores, which are small iron-binding molecules that “steal” iron from the host. LCN2 binds the catecholate siderophore enterobactin, preventing bacterial re-uptake of iron and slowing growth of enterobactin-dependent organisms.[6] This mechanism is a core component of mammalian innate immunity and is strongly induced by microbial sensing pathways.[7]

Microbiome consequences are clinically relevant: in inflamed intestines, some pathogens gain a selective advantage by using “LCN2-resistant” iron acquisition systems. In experimental gut infection, Salmonella enterica benefits from inflammation because it can evade LCN2-mediated iron restriction, improving colonization of the inflamed gut compared with LCN2-susceptible competitors.[8]

Fecal LCN2 as a noninvasive biomarker of intestinal inflammation

LCN2 is robust in stool and shows a wide dynamic range during colitis, supporting its use as a noninvasive marker of intestinal inflammation in preclinical models.[9] In humans, fecal NGAL/LCN2 is detectable in active inflammatory bowel disease (IBD) and has been evaluated as a diagnostic and monitoring biomarker because it reflects mucosal inflammatory activity and epithelial involvement.[10] Serum LCN2 also increases with IBD activity and is inducible in colonic epithelial cells by inflammatory cytokines, reinforcing its link to epithelial immune activation.[11]

Translational relevance in microbiome medicine

Because LCN2 integrates host inflammatory tone with microbial iron competition, it is increasingly used to bridge clinical assessment (symptom and endoscopy-aligned inflammation) with microbiome-focused outcomes such as dysbiosis risk and pathogen expansion.[12][13][14] In practice, LCN2 is best interpreted alongside clinical context and other inflammatory markers, but its biology uniquely connects intestinal barrier stress to microbiome selection pressures through iron restriction.[15][16]

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Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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An iron delivery pathway mediated by a lipocalin

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Lipocalin-2 resistance confers an advantage to Salmonella enterica serotype Typhimurium for growth and survival in the inflamed intestine

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Fecal Lipocalin 2, a Sensitive and Broadly Dynamic Non-Invasive Biomarker for Intestinal Inflammation

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Fecal Neutrophil Gelatinase Associated Lipocalin (NGAL) as a biomarker for Inflammatory Bowel Disease

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Lipocalin-2 Is a Disease Activity Marker in Inflammatory Bowel Disease Regulated by IL-17A, IL-22, and TNF-α and Modulated by IL23R Genotype Status

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Update History

2026-01-10 11:47:51

Lipocalin-2 major

published

References

  1. Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron. Flo TH, Smith KD, Sato S, et al.. (Nature. 2004)
  2. An iron delivery pathway mediated by a lipocalin. Yang J, Goetz D, Li JY, et al.. (Mol Cell. 2002)
  3. Lipocalin-2 resistance confers an advantage to Salmonella enterica serotype Typhimurium for growth and survival in the inflamed intestine.. Raffatellu M, George MD, Akiyama Y, et al.. (Cell Host Microbe. 2009)
  4. Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron. Flo TH, Smith KD, Sato S, et al.. (Nature. 2004)
  5. An iron delivery pathway mediated by a lipocalin. Yang J, Goetz D, Li JY, et al.. (Mol Cell. 2002)
  6. Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron. Flo TH, Smith KD, Sato S, et al.. (Nature. 2004)
  7. Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron. Flo TH, Smith KD, Sato S, et al.. (Nature. 2004)
  8. Lipocalin-2 resistance confers an advantage to Salmonella enterica serotype Typhimurium for growth and survival in the inflamed intestine.. Raffatellu M, George MD, Akiyama Y, et al.. (Cell Host Microbe. 2009)
  9. Fecal Lipocalin 2, a Sensitive and Broadly Dynamic Non-Invasive Biomarker for Intestinal Inflammation. Chassaing B, Srinivasan G, Delgado MA, Young AN, Gewirtz AT, Vijay-Kumar M.. (PLoS ONE. 2012)
  10. Fecal Neutrophil Gelatinase Associated Lipocalin (NGAL) as a biomarker for Inflammatory Bowel Disease. Thorsvik S, Damås JK, Granlund AVB, Flo TH, Bergh K, Østvik AE, Sandvik AK.. (J Gastroenterol Hepatol. 2017)
  11. Lipocalin-2 Is a Disease Activity Marker in Inflammatory Bowel Disease Regulated by IL-17A, IL-22, and TNF-α and Modulated by IL23R Genotype Status.. Stallhofer J, Friedrich M, Konrad-Zerna A, et al.. (Inflamm Bowel Dis. 2015)
  12. Lipocalin-2 resistance confers an advantage to Salmonella enterica serotype Typhimurium for growth and survival in the inflamed intestine.. Raffatellu M, George MD, Akiyama Y, et al.. (Cell Host Microbe. 2009)
  13. Fecal Neutrophil Gelatinase Associated Lipocalin (NGAL) as a biomarker for Inflammatory Bowel Disease. Thorsvik S, Damås JK, Granlund AVB, Flo TH, Bergh K, Østvik AE, Sandvik AK.. (J Gastroenterol Hepatol. 2017)
  14. Lipocalin-2 Is a Disease Activity Marker in Inflammatory Bowel Disease Regulated by IL-17A, IL-22, and TNF-α and Modulated by IL23R Genotype Status.. Stallhofer J, Friedrich M, Konrad-Zerna A, et al.. (Inflamm Bowel Dis. 2015)
  15. Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron. Flo TH, Smith KD, Sato S, et al.. (Nature. 2004)
  16. Lipocalin-2 resistance confers an advantage to Salmonella enterica serotype Typhimurium for growth and survival in the inflamed intestine.. Raffatellu M, George MD, Akiyama Y, et al.. (Cell Host Microbe. 2009)

Yang J, Goetz D, Li JY, et al.

An iron delivery pathway mediated by a lipocalin

Mol Cell. 2002

Read Review

Yang J, Goetz D, Li JY, et al.

An iron delivery pathway mediated by a lipocalin

Mol Cell. 2002

Read Review

Chassaing B, Srinivasan G, Delgado MA, Young AN, Gewirtz AT, Vijay-Kumar M.

Fecal Lipocalin 2, a Sensitive and Broadly Dynamic Non-Invasive Biomarker for Intestinal Inflammation

PLoS ONE. 2012

Read Review

Thorsvik S, Damås JK, Granlund AVB, Flo TH, Bergh K, Østvik AE, Sandvik AK.

Fecal Neutrophil Gelatinase Associated Lipocalin (NGAL) as a biomarker for Inflammatory Bowel Disease

J Gastroenterol Hepatol. 2017

Read Review

Thorsvik S, Damås JK, Granlund AVB, Flo TH, Bergh K, Østvik AE, Sandvik AK.

Fecal Neutrophil Gelatinase Associated Lipocalin (NGAL) as a biomarker for Inflammatory Bowel Disease

J Gastroenterol Hepatol. 2017

Read Review
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