Did you know?
Crohn’s disease is not limited to the gut. Extra-intestinal manifestations (EIMs) such as arthritis, skin rashes like erythema nodosum, and eye inflammation (uveitis) are common in up to 25% of Crohn’s patients. These EIMs complicate treatment and require coordinated care across multiple specialties.

Crohn’s Disease

Researched by:

  • Divine Aleru
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

December 15, 2025

Crohn’s disease is a chronic inflammatory condition of the gastrointestinal tract that can cause a wide range of symptoms, including abdominal pain, diarrhea, and fatigue. The exact cause of the disease remains unclear, but it is believed to result from a combination of genetic predisposition and environmental factors. Although there is no cure, ongoing advancements in medical research continue to improve management strategies and quality of life for those affected by Crohn’s disease.

research-feed Research feed

Researched by:

  • Divine Aleru
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

Last Updated: 2025-12-15

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

See full history

Karen Pendergrass

Karen Pendergrass is a microbiome researcher specializing in microbiome-targeted interventions (MBTIs). She systematically analyzes scientific literature to identify microbial patterns, develop hypotheses, and validate interventions. As the founder of the Microbiome Signatures Database, she bridges microbiome research with clinical practice. In 2012, based on her own investigative research, she became the first documented case of FMT for Celiac Disease, four years before the first published case study.

Overview

Crohn’s disease (CD) is a chronic, relapsing inflammatory bowel disease characterized by patchy, transmural inflammation that can affect any part of the gastrointestinal tract from the mouth to the anus. Pathologically, it often features non-caseating granulomas and segmental “skip” lesions, distinguishing it from the continuous lesions of ulcerative colitis.[1] CD is now understood as a systemic, immune-mediated condition triggered by an abnormal host immune response to the intestinal microbiome in a genetically susceptible individual.[2] Its complex pathophysiology involves a convergence of factors, including susceptibility genes, gut microbiota dysbiosis, epithelial barrier dysfunction, and environmental triggers, that together drive chronic mucosal inflammation.[3][4] The incidence of Crohn’s disease has risen globally, especially in newly industrialized regions, highlighting the influence of modern environmental and lifestyle factors on disease emergence.[5]

Associated Conditions

Crohn’s disease is a systemic inflammatory disorder that not only affects the gastrointestinal tract but also has widespread effects on other organ systems. Within the gastrointestinal system, CD can lead to various complications such as strictures, fistulas, abscesses, and intestinal perforations.[6][7] These complications arise due to the chronic inflammation of the intestinal wall, which can lead to scarring, deep tissue damage, and abnormal connections between parts of the intestine or between the intestine and other organs. CD is also associated with extraintestinal manifestations (EIMs) like arthritis, uveitis, and skin conditions such as erythema nodosum and pyoderma gangrenosum.[8] Patients with Crohn’s disease also face an increased risk of metabolic and nutritional complications, including malabsorption, malnutrition, and deficiencies in essential vitamins and minerals (e.g., vitamin B12, iron).[9] Conditions like primary sclerosing cholangitis and autoimmune hepatitis are also seen in some CD patients, highlighting the disease’s systemic nature.[10]

Causes / Causal Theories

Crohn’s disease is believed to result from a confluence of genetic, microbial, immunologic, and environmental factors, rather than a single cause.[11] In a genetically predisposed host, triggers in the environment (such as dietary changes or infections) may disrupt the gut microbiome and mucosal barrier, leading to a maladaptive immune response in the intestine.[12] Several lines of evidence support this multifactorial model and have given rise to several key causal theories. Therapeutic responses highlight the importance of both microbes and immunity: for example, antibiotics targeting bacterial components and immunomodulators like thalidomide (an older drug repurposed for IBD) have both induced remission in Crohn’s patients.[13]

Diagnosis

There is no single test that diagnoses Crohn’s disease at the moment. The accepted diagnostic approach is a combination of clinical evaluation and multiple modalities (“multiple hits”): endoscopic evidence of focal, chronic ulceration (often with normal intervening areas), histological confirmation of chronic active inflammation (with granulomas if present), imaging of the small bowel to assess extent, and exclusion of infections or alternate causes.[14] Newer tools like capsule endoscopy can visualize the small intestine for lesions, and intestinal ultrasound is emerging in some centers as a radiation-free monitoring tool. Once diagnosis is established, clinicians typically classify Crohn’s by location and behavior (using the Montreal or Paris classification), as these have prognostic significance, and they may utilize experimental markers to stratify disease or guide therapy in the future.[15]

Primer

Crohn’s disease is a complex, chronic inflammatory condition primarily affecting the gastrointestinal tract. The disease is driven by a dysregulated immune response to the gut microbiome, leading to chronic inflammation, tissue damage, and complications like strictures and fistulas.[16] Microbial dysbiosis plays a central role in disease initiation and progression, influencing both immune activation and intestinal permeability.[17] Disruptions in metal homeostasis, particularly in trace elements such as zinc and iron, contribute to inflammation and microbial shifts, creating a cycle that perpetuates disease activity.[18][19] The combination of immune system abnormalities, microbiome alterations, and metallomic imbalances underscores the systemic nature of Crohn’s disease, providing a deeper understanding of its pathogenesis and highlighting emerging opportunities for microbiome-based diagnostics and personalized therapies.

Metabolomic Signatures

Crohn’s disease is associated with distinctive shifts in metabolism – many driven by an imbalanced gut microbiome. Patients with CD exhibit broad disturbances in their metabolite profiles, in keeping with the dysbiosis observed in the gut microbiota.[20] In health, gut bacteria produce beneficial compounds (like short-chain fatty acids) and regulate bile acids and amino acids; in Crohn’s, these pathways are often disrupted.[21]

Metallomic Signatures

Trace metal imbalances are a hallmark of Crohn’s disease, arising from both malabsorption and the body’s own immune responses that alter metal distribution. Zinc, iron, and copper in particular show disturbed levels in Crohn’s patients, and these imbalances influence both host immunity and the gut microbial ecosystem. Crohn’s disease entails significant disturbances in trace metals: iron and zinc are sequestered by the host to inhibit microbes, leading to deficiencies, while certain bacteria deploy strategies to acquire these metals, influencing microbial composition. These imbalances (or “mismetalation”) impact disease pathogenesis.

Nutritional Immunity and Supplementation Paradoxes

The concept of nutritional immunity, which is the host’s strategy of withholding nutrients (like metals) to combat pathogens, is key to understanding some paradoxical findings in Crohn’s disease.[22] The immune system actively alters nutrient availability during inflammation: as noted, it hides away iron and zinc, creating an unfriendly environment for bacteria. This is beneficial in controlling infection, but in Crohn’s, it also contributes to micronutrient deficiencies. Attempts to correct these deficiencies through supplementation can yield unexpected results, sometimes worsening inflammation or dysbiosis if not done carefully. Nutritional immunity and Crohn’s create a delicate balance: the body’s efforts to protect itself by sequestering nutrients can lead to deficiencies, and reversing those deficiencies isn’t as simple as giving high-dose supplements.

Microbiome Signature: Crohn’s Disease

Interventions

Beyond conventional therapies, a range of emerging and non-mainstream interventions are being explored for Crohn’s disease – often aiming to target the microbiome, dietary factors, or novel pathways of inflammation. Given the central role of gut bacteria in Crohn’s, therapies that alter the microbiome are a major focus. These approaches are in early clinical trials or have mechanistic support in research.

In addition to the Phase 2–3 trials in Crohn’s, a wave of therapies that target specific immune and microbial pathways is being brought forward: IL-23 p19 inhibitors and S1P modulators are leading the pack with positive trial results, and others like JAK inhibitors and novel biologics are close behind.[23] The hope is that within the next few years, these will expand the toolkit for Crohn’s, allowing more personalized and effective treatment regimens.

FAQs

Research Feed

Diagnostic Procedures for Inflammatory Bowel Disease: Laboratory, Endoscopy, Pathology, Imaging, and Beyond
June 28, 2024
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Microbes
Microbes

Microbes are microscopic organisms living in and on the human body, shaping health through digestion, vitamin production, and immune protection. When microbial balance is disrupted, disease can occur. This guide explains the key types of microorganisms, bacteria, viruses, fungi, protozoa, and archaea, along with major examples of pathogenic and beneficial species.

Crohn’s Disease
Crohn’s Disease

Did you know?
Crohn’s disease is not limited to the gut. Extra-intestinal manifestations (EIMs) such as arthritis, skin rashes like erythema nodosum, and eye inflammation (uveitis) are common in up to 25% of Crohn’s patients. These EIMs complicate treatment and require coordinated care across multiple specialties.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Crohn’s Disease: Evolution, Epigenetics, and the Emerging Role of Microbiome-Targeted Therapies
February 23, 2016
/
Crohn’s Disease
Crohn’s Disease

Did you know?
Crohn’s disease is not limited to the gut. Extra-intestinal manifestations (EIMs) such as arthritis, skin rashes like erythema nodosum, and eye inflammation (uveitis) are common in up to 25% of Crohn’s patients. These EIMs complicate treatment and require coordinated care across multiple specialties.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Novel Insights into the Pathogenesis of Inflammatory Bowel Diseases
January 25, 2025
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Crohn’s Disease
Crohn’s Disease

Did you know?
Crohn’s disease is not limited to the gut. Extra-intestinal manifestations (EIMs) such as arthritis, skin rashes like erythema nodosum, and eye inflammation (uveitis) are common in up to 25% of Crohn’s patients. These EIMs complicate treatment and require coordinated care across multiple specialties.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Epithelial barrier dysfunction and microbial dysbiosis in Crohn’s disease
August 26, 2024
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Environmental risk factors of inflammatory bowel disease: toward a strategy of preventative health
March 11, 2025
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Intestinal Stricture in Crohn’s Disease
January 29, 2015
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Clinical Features of Intra-Abdominal Abscess and Intestinal Free-Wall Perforation in Korean Patients with Crohn’s Disease
December 30, 2020
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Extraintestinal Manifestations in Inflammatory Bowel Disease: From Pathophysiology to Treatment
August 12, 2024
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Nutritional Status and Its Detection in Patients with Inflammatory Bowel Diseases
April 20, 2023
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Prevalence and Bidirectional Association Between Autoimmune Liver Disease and Inflammatory Bowel Disease
August 10, 2025
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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The Link between Ankylosing Spondylitis, Crohn’s Disease, Klebsiella, and Starch Consumption
May 27, 2013
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Microbes
Microbes

Microbes are microscopic organisms living in and on the human body, shaping health through digestion, vitamin production, and immune protection. When microbial balance is disrupted, disease can occur. This guide explains the key types of microorganisms, bacteria, viruses, fungi, protozoa, and archaea, along with major examples of pathogenic and beneficial species.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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New developments in our understanding of ankylosing spondylitis pathogenesis
July 22, 2020
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Psoriasis and inflammatory bowel disease: links and risks
July 20, 2016
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Psoriasis as a Potential Risk Factor for Inflammatory Bowel Disease (IBD)
September 23, 2025
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Incidence of and Risk Factors for Paradoxical Psoriasis or Psoriasiform Lesions in Inflammatory Bowel Disease Patients Receiving Anti-TNF Therapy
March 1, 2022
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Primary sclerosing cholangitis and inflammatory bowel disease comorbidity: an update of the evidence
January 15, 2019
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Ocular Manifestations of IBD: Pathophysiology, Epidemiology, and Iatrogenic Associations of Emerging Treatment Strategies
December 16, 2024
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Extraintestinal Manifestations of Inflammatory Bowel Disease
February 1, 2008
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Pyoderma gangrenosum and inflammatory bowel disease: Recent insights into epidemiology, pathogenesis, and therapeutic approaches.
November 12, 2025
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Long-term risk of inflammatory bowel disease in autoimmune hepatitis: Over a 20-year population-based study
September 6, 2025
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Thromboembolic Events in Patients with Inflammatory Bowel Disease: A Comprehensive Overview
September 30, 2022
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Nephrolithiasis in Crohn’s Disease Patients: A Review of the Literature
April 1, 2022
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Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Osteoporosis Complications in Crohn’s Disease Patients: Factors, Pathogenesis, and Treatment Outlines
December 21, 2025
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Genetic and environmental factors influencing Crohn’s disease
March 27, 2025
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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NOD2 in Crohn’s Disease, Unfinished Business
August 25, 2022
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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The Role of Gut Microbiota in Intestinal Inflammation with Respect to Diet and Extrinsic Stressors
August 19, 2019
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Advancements in Immunomodulatory Therapies for IBD and Their Interplay With the Gut–Brain Axis
August 10, 2025
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Genetic and Epigenetic Etiology of Inflammatory Bowel Disease: An Update
December 16, 2022
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Microbial dysbiosis in the gut drives systemic autoimmune diseases
October 20, 2022
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Gut microbiota dysbiosis in inflammatory bowel disease: Interaction with intestinal barriers and microbiota-targeted treatment options
June 27, 2025
/
Microbes
Microbes

Microbes are microscopic organisms living in and on the human body, shaping health through digestion, vitamin production, and immune protection. When microbial balance is disrupted, disease can occur. This guide explains the key types of microorganisms, bacteria, viruses, fungi, protozoa, and archaea, along with major examples of pathogenic and beneficial species.

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Mycobacterium avium subspecies paratuberculosis (MAP) and Crohn’s disease: the debate continues
July 25, 2023
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Mycobacterium avium subspecies paratuberculosis and its relationship with Crohn’s disease
January 28, 2009
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Environmental Influences on the Onset and Clinical Course of Crohn’s Disease
November 1, 2013
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Epidemiological studies of migration and environmental risk factors in the inflammatory bowel diseases
February 7, 2014
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Artificial intelligence-assisted capsule endoscopy for detecting lesions in Crohn’s disease
April 1, 2025
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Crohn’s disease and clinical management today: How it does?
December 20, 2023
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Homeostasis and Inflammation in the Intestine
March 19, 2010
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Microbiome-metabolome generated bile acids gatekeep infliximab efficacy in Crohn’s disease
August 12, 2025
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Metabolic Influences of Gut Microbiota Dysbiosis on Inflammatory Bowel Disease
September 27, 2021
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Succinate’s Dual Roles in Inflammatory Bowel Disease
October 28, 2025
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Succinate metabolism: underlying biological mechanisms and emerging therapeutic targets in inflammatory bowel disease
September 10, 2025
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Relationship between the gut microbiota and bile acid composition in the ileal mucosa of Crohn’s disease
May 14, 2021
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Altered fecal bile acid composition in active ulcerative colitis
November 18, 2023
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Iron Deficiency Anemia: An Overlooked Complication of Crohn’s Disease
April 12, 2022
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Siderophore-mediated iron acquisition and modulation of host-bacterial interactions
October 27, 2016
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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The Prevalence of Zinc Deficiency in Crohn’s Disease Patients
March 1, 2021
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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The Copper/Zinc Ratio Correlates With Markers of Disease Activity in Patients With Inflammatory Bowel Disease.
January 23, 2020
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Copper in infectious disease: Using both sides of the penny
January 7, 2021
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark
July 8, 2015
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

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Nutritional Immunity and Metallomic Signatures: Metal Competition at the Host–Pathogen Interface
Metals
Metals

Heavy metals influence microbial pathogenicity in two ways: they can be toxic to microbes by disrupting cellular functions and inducing oxidative stress, and they can be exploited by pathogens to enhance survival, resist treatment, and evade immunity. Understanding metal–microbe interactions supports better antimicrobial and public health strategies.

Nutritional Immunity
Nutritional Immunity

Nutritional immunity restricts metal access to pathogens, leveraging sequestration, transport, and toxicity to control infections and immunity.

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The effect of iron therapy on oxidative stress and intestinal microbiota in inflammatory bowel diseases: A review on the conundrum
October 30, 2023
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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The role of zinc and nutritional immunity in Clostridium difficile infection
September 25, 2018
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Gut Microbiota: Role in Pathogen Colonization, Immune Responses and Inflammatory Disease
September 1, 2018
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Phage therapy: Targeting intestinal bacterial microbiota for the treatment of liver diseases
September 23, 2023
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Anti-Mycobacterium paratuberculosis (MAP) therapy for Crohn’s disease: an overview and update
July 28, 2020

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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The effects of hyperbaric treatment on perianal fistula activity in patients with Crohn’s disease
September 23, 2024
/
Autoimmune Diseases
Autoimmune Diseases

Did you know?
Americans are over three times more likely to suffer from autoimmune diseases compared to the global average, with approximately 16.67% of the U.S. population affected versus 5% worldwide.

Alias iure reprehenderit aut accusantium. Molestiae dolore suscipit. Necessitatibus eum quaerat. Repudiandae suscipit quo necessitatibus. Voluptatibus ullam nulla temporibus nobis. Atque eaque sed totam est assumenda. Porro modi soluta consequuntur veritatis excepturi minus delectus reprehenderit est. Eveniet labore ut quas minima aliquid quibusdam. Vitae possimus fuga praesentium eveniet debitis exercitationem deleniti.

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Microbiome Insiders can read two study summaries for any topic on Microbiome.

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Update History

2025-11-03 13:04:59

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published

Microbes

Microbes are microscopic organisms living in and on the human body, shaping health through digestion, vitamin production, and immune protection. When microbial balance is disrupted, disease can occur. This guide explains key microbe types, bacteria, viruses, fungi, protozoa, and archaea, plus major pathogenic and beneficial examples.

Crohn’s Disease

Crohn's disease is a chronic inflammatory condition of the gastrointestinal tract that can cause a wide range of symptoms, including abdominal pain, diarrhea, and fatigue. The exact cause of the disease remains unclear, but it is believed to result from a combination of genetic predisposition and environmental factors. Although there is no cure, ongoing advancements in medical research continue to improve management strategies and quality of life for those affected by Crohn's disease.

Crohn’s Disease

Crohn's disease is a chronic inflammatory condition of the gastrointestinal tract that can cause a wide range of symptoms, including abdominal pain, diarrhea, and fatigue. The exact cause of the disease remains unclear, but it is believed to result from a combination of genetic predisposition and environmental factors. Although there is no cure, ongoing advancements in medical research continue to improve management strategies and quality of life for those affected by Crohn's disease.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Crohn’s Disease

Crohn's disease is a chronic inflammatory condition of the gastrointestinal tract that can cause a wide range of symptoms, including abdominal pain, diarrhea, and fatigue. The exact cause of the disease remains unclear, but it is believed to result from a combination of genetic predisposition and environmental factors. Although there is no cure, ongoing advancements in medical research continue to improve management strategies and quality of life for those affected by Crohn's disease.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Microbes

Microbes are microscopic organisms living in and on the human body, shaping health through digestion, vitamin production, and immune protection. When microbial balance is disrupted, disease can occur. This guide explains key microbe types, bacteria, viruses, fungi, protozoa, and archaea, plus major pathogenic and beneficial examples.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Microbes

Microbes are microscopic organisms living in and on the human body, shaping health through digestion, vitamin production, and immune protection. When microbial balance is disrupted, disease can occur. This guide explains key microbe types, bacteria, viruses, fungi, protozoa, and archaea, plus major pathogenic and beneficial examples.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Metals

Heavy metals influence microbial pathogenicity in two ways: they can be toxic to microbes by disrupting cellular functions and inducing oxidative stress, and they can be exploited by pathogens to enhance survival, resist treatment, and evade immunity. Understanding metal–microbe interactions supports better antimicrobial and public health strategies.

Nutritional Immunity

Nutritional immunity restricts metal access to pathogens, leveraging sequestration, transport, and toxicity to control infections and immunity.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Autoimmune Diseases

Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

References

  1. Diagnostic Procedures for Inflammatory Bowel Disease: Laboratory, Endoscopy, Pathology, Imaging, and Beyond.. Hong, Seung M., and Dong H. Baek.. (Diagnostics 14, no. 13 (2024): 1384. Accessed December 6, 2025.)
  2. Crohn’s disease: Evolution, epigenetics, and the emerging role of microbiome-targeted therapies.. DeFilippis, E. M., Longman, R., Harbus, M., Dannenberg, K., & Scherl, E. J. (2016).. (Current Gastroenterology Reports, 18(13), 13.)
  3. Novel Insights into the Pathogenesis of Inflammatory Bowel Diseases.. Calvez, V., Puca, P., Vincenzo, F. D., Gaudio, A. D., Bartocci, B., Murgiano, M., Iaccarino, J., Parand, E., Napolitano, D., Pugliese, D., Gasbarrini, A., & Scaldaferri, F. (2025).. (Biomedicines, 13(2).)
  4. Exploring the pathogenesis and therapeutic strategies for Crohn’s disease.. Akkoç, T. (2024). Epithelial barrier dysfunction and microbial dysbiosis:. (Tissue Barriers, 13(2), 2390705.)
  5. Environmental risk factors of inflammatory bowel disease: Toward a strategy of preventative health.. Chhibba, T., Gros, B., King, J. A., Windsor, J. W., Gorospe, J., Leibovitzh, H., Xue, M., Turpin, W., Croitoru, K., Ananthakrishnan, A. N., Gearry, R. B., & Kaplan, G. G. (2025).. (Journal of Crohn's and Colitis, 19(4).)
  6. Intestinal Stricture in Crohn's Disease.. Chang, W., Wong, M., Tung, C., Shih, L., Wang, Y., & Wei, C. (2015).. (Intestinal Research, 13(1), 19.)
  7. Clinical Features of Intra-Abdominal Abscess and Intestinal Free-Wall Perforation in Korean Patients with Crohn’s Disease: Results from the CONNECT Study.. Jeong, H., Choi, J. S., Kim, J. W., Kim, H. M., Kim, S., Im, J. P., Kim, J. S., Kim, Y. S., Cheon, J. H., Kim, W. H., Ye, B. D., Kim, H., Han, D. S., Jeong, H., Choi, J. S., Kim, J. W., Kim, H. M., Kim, S., Im, J. P., . . . Han, D. S. (2020).. (Journal of Clinical Medicine, 10(1).)
  8. Extraintestinal Manifestations in Inflammatory Bowel Disease: From Pathophysiology to Treatment.. Faggiani, I., Fanizza, J., Allocca, M., Zilli, A., Parigi, T. L., Barchi, A., Danese, S., Furfaro, F., Faggiani, I., Fanizza, J., Allocca, M., Zilli, A., Parigi, T. L., Barchi, A., Danese, S., & Furfaro, F. (2024).. (Biomedicines, 12(8).)
  9. Nutritional Status and Its Detection in Patients with Inflammatory Bowel Diseases.. Jabłońska, B., & Mrowiec, S. (2023).. (Nutrients, 15(8), 1991.)
  10. Prevalence and Bidirectional Association Between Autoimmune Liver Disease and Inflammatory Bowel Disease: A Meta-Analysis.. Shi, H., Dou, D., Zhang, F., Du, Y., Zhao, L., Zhi, J., & Zhao, L. (2025).. (Journal of Gastroenterology and Hepatology, 40(10), 2362-2372.)
  11. Genetic and environmental factors influencing Crohn’s disease.. Fan, H., Wang, W., Gao, N., Li, M., & Jiao, Y. (2025).. (World Journal of Gastrointestinal Surgery, 17(3), 98526.)
  12. The Role of Gut Microbiota in Intestinal Inflammation with Respect to Diet and Extrinsic Stressors.. Lobionda, S., Sittipo, P., Kwon, H.Y., & Lee, Y.K. (2019).. (Microorganisms, 7(8), 271.)
  13. Advancements in Immunomodulatory Therapies for IBD and Their Interplay With the Gut–Brain Axis: An Updated Review of Current Literature and Beyond.. Jha, M., Waheed, A., Hooti, J. A., Nair, S., Najam, A., Mal, M., Tummala, N., Shariq, A. S., Hurairah, A., & Daniel, M. (2025).. (Health Science Reports, 8(8), e71157.)
  14. Diagnostic Procedures for Inflammatory Bowel Disease: Laboratory, Endoscopy, Pathology, Imaging, and Beyond.. Hong, Seung M., and Dong H. Baek.. (Diagnostics 14, no. 13 (2024): 1384. Accessed December 6, 2025.)
  15. Artificial intelligence-assisted capsule endoscopy for detecting lesions in Crohn’s disease: A systematic review and meta-analysis.. Bin, Y., Peng, R., Lee, Y., Lee, Z., & Liu, Y. (2025).. (Frontiers in Artificial Intelligence, 8, 1531362.)
  16. Crohn's disease and clinical management today: How it does?. Júnior, S., Apolonio, J. S., Nascimento, S., Malheiro, L. H., Luz, M. S., & Santos, S. (2023).. (World Journal of Methodology, 13(5), 399.)
  17. Microbial dysbiosis in the gut drives systemic autoimmune diseases.. Mousa, W. K., Chehadeh, F., & Husband, S. (2022).. (Frontiers in Immunology, 13, 906258.)
  18. Heavy Metals and Inflammatory Bowel Disease.. Narvey, S., Ghia, J., Marrie, R. A., Armstrong, H., & Bernstein, C. N. (2025).. (Gastroenterology, 169(5), 761-766.e2.)
  19. Homeostasis and Inflammation in the Intestine.. Garrett, W. S., Gordon, J. I., & Glimcher, L. H. (2010).. (Cell, 140(6), 859.)
  20. Microbiome-metabolome generated bile acids gatekeep infliximab efficacy in Crohn’s disease by licensing M1 suppression and Treg dominance.. Liu, L., Liang, L., Liang, H., Wang, M., Zhou, W., Mai, G., Yang, C., & Chen, Y. (2025).. (Journal of Advanced Research.)
  21. Metabolic Influences of Gut Microbiota Dysbiosis on Inflammatory Bowel Disease.. Sultan, S., El-Mowafy, M., Elgaml, A., E Ahmed, T. A., Hassan, H., & Mottawea, W. (2021).. (Frontiers in Physiology, 12, 715506.)
  22. Nutritional immunity: the battle for nutrient metals at the host–pathogen interface.. Murdoch CC, Skaar EP.. (Nat Rev Microbiol. 2022;20(11):657-670.)
  23. The Role of IL-23 Inhibitors in Crohn’s Disease.. Fanizza, J., Lusetti, F., Fasulo, E., Allocca, M., Furfaro, F., Zilli, A., Parigi, T. L., Radice, S., Peyrin-Biroulet, L., Danese, S., Fiorino, G., Fanizza, J., Lusetti, F., Fasulo, E., Allocca, M., Furfaro, F., Zilli, A., Parigi, T. L., Radice, S., . . . Fiorino, G. (2023).. (Journal of Clinical Medicine, 13(1).)

Hong, Seung M., and Dong H. Baek.

Diagnostic Procedures for Inflammatory Bowel Disease: Laboratory, Endoscopy, Pathology, Imaging, and Beyond.

Diagnostics 14, no. 13 (2024): 1384. Accessed December 6, 2025.

Read Review

DeFilippis, E. M., Longman, R., Harbus, M., Dannenberg, K., & Scherl, E. J. (2016).

Crohn’s disease: Evolution, epigenetics, and the emerging role of microbiome-targeted therapies.

Current Gastroenterology Reports, 18(13), 13.

Read Review

Calvez, V., Puca, P., Vincenzo, F. D., Gaudio, A. D., Bartocci, B., Murgiano, M., Iaccarino, J., Parand, E., Napolitano, D., Pugliese, D., Gasbarrini, A., & Scaldaferri, F. (2025).

Novel Insights into the Pathogenesis of Inflammatory Bowel Diseases.

Biomedicines, 13(2).

Read Review

Akkoç, T. (2024). Epithelial barrier dysfunction and microbial dysbiosis:

Exploring the pathogenesis and therapeutic strategies for Crohn’s disease.

Tissue Barriers, 13(2), 2390705.

Read Review

Chhibba, T., Gros, B., King, J. A., Windsor, J. W., Gorospe, J., Leibovitzh, H., Xue, M., Turpin, W., Croitoru, K., Ananthakrishnan, A. N., Gearry, R. B., & Kaplan, G. G. (2025).

Environmental risk factors of inflammatory bowel disease: Toward a strategy of preventative health.

Journal of Crohn's and Colitis, 19(4).

Read Review

Chang, W., Wong, M., Tung, C., Shih, L., Wang, Y., & Wei, C. (2015).

Intestinal Stricture in Crohn's Disease.

Intestinal Research, 13(1), 19.

Read Review

Jeong, H., Choi, J. S., Kim, J. W., Kim, H. M., Kim, S., Im, J. P., Kim, J. S., Kim, Y. S., Cheon, J. H., Kim, W. H., Ye, B. D., Kim, H., Han, D. S., Jeong, H., Choi, J. S., Kim, J. W., Kim, H. M., Kim, S., Im, J. P., . . . Han, D. S. (2020).

Clinical Features of Intra-Abdominal Abscess and Intestinal Free-Wall Perforation in Korean Patients with Crohn’s Disease: Results from the CONNECT Study.

Journal of Clinical Medicine, 10(1).

Read Review

Faggiani, I., Fanizza, J., Allocca, M., Zilli, A., Parigi, T. L., Barchi, A., Danese, S., Furfaro, F., Faggiani, I., Fanizza, J., Allocca, M., Zilli, A., Parigi, T. L., Barchi, A., Danese, S., & Furfaro, F. (2024).

Extraintestinal Manifestations in Inflammatory Bowel Disease: From Pathophysiology to Treatment.

Biomedicines, 12(8).

Read Review

Jabłońska, B., & Mrowiec, S. (2023).

Nutritional Status and Its Detection in Patients with Inflammatory Bowel Diseases.

Nutrients, 15(8), 1991.

Read Review

Shi, H., Dou, D., Zhang, F., Du, Y., Zhao, L., Zhi, J., & Zhao, L. (2025).

Prevalence and Bidirectional Association Between Autoimmune Liver Disease and Inflammatory Bowel Disease: A Meta-Analysis.

Journal of Gastroenterology and Hepatology, 40(10), 2362-2372.

Read Review

Fan, H., Wang, W., Gao, N., Li, M., & Jiao, Y. (2025).

Genetic and environmental factors influencing Crohn’s disease.

World Journal of Gastrointestinal Surgery, 17(3), 98526.

Read Review

Lobionda, S., Sittipo, P., Kwon, H.Y., & Lee, Y.K. (2019).

The Role of Gut Microbiota in Intestinal Inflammation with Respect to Diet and Extrinsic Stressors.

Microorganisms, 7(8), 271.

Read Review

Jha, M., Waheed, A., Hooti, J. A., Nair, S., Najam, A., Mal, M., Tummala, N., Shariq, A. S., Hurairah, A., & Daniel, M. (2025).

Advancements in Immunomodulatory Therapies for IBD and Their Interplay With the Gut–Brain Axis: An Updated Review of Current Literature and Beyond.

Health Science Reports, 8(8), e71157.

Read Review

Hong, Seung M., and Dong H. Baek.

Diagnostic Procedures for Inflammatory Bowel Disease: Laboratory, Endoscopy, Pathology, Imaging, and Beyond.

Diagnostics 14, no. 13 (2024): 1384. Accessed December 6, 2025.

Read Review

Bin, Y., Peng, R., Lee, Y., Lee, Z., & Liu, Y. (2025).

Artificial intelligence-assisted capsule endoscopy for detecting lesions in Crohn’s disease: A systematic review and meta-analysis.

Frontiers in Artificial Intelligence, 8, 1531362.

Read Review

Júnior, S., Apolonio, J. S., Nascimento, S., Malheiro, L. H., Luz, M. S., & Santos, S. (2023).

Crohn's disease and clinical management today: How it does?

World Journal of Methodology, 13(5), 399.

Read Review

Mousa, W. K., Chehadeh, F., & Husband, S. (2022).

Microbial dysbiosis in the gut drives systemic autoimmune diseases.

Frontiers in Immunology, 13, 906258.

Read Review

Narvey, S., Ghia, J., Marrie, R. A., Armstrong, H., & Bernstein, C. N. (2025).

Heavy Metals and Inflammatory Bowel Disease.

Gastroenterology, 169(5), 761-766.e2.

Garrett, W. S., Gordon, J. I., & Glimcher, L. H. (2010).

Homeostasis and Inflammation in the Intestine.

Cell, 140(6), 859.

Read Review

Liu, L., Liang, L., Liang, H., Wang, M., Zhou, W., Mai, G., Yang, C., & Chen, Y. (2025).

Microbiome-metabolome generated bile acids gatekeep infliximab efficacy in Crohn’s disease by licensing M1 suppression and Treg dominance.

Journal of Advanced Research.

Read Review

Sultan, S., El-Mowafy, M., Elgaml, A., E Ahmed, T. A., Hassan, H., & Mottawea, W. (2021).

Metabolic Influences of Gut Microbiota Dysbiosis on Inflammatory Bowel Disease.

Frontiers in Physiology, 12, 715506.

Read Review

Fanizza, J., Lusetti, F., Fasulo, E., Allocca, M., Furfaro, F., Zilli, A., Parigi, T. L., Radice, S., Peyrin-Biroulet, L., Danese, S., Fiorino, G., Fanizza, J., Lusetti, F., Fasulo, E., Allocca, M., Furfaro, F., Zilli, A., Parigi, T. L., Radice, S., . . . Fiorino, G. (2023).

The Role of IL-23 Inhibitors in Crohn’s Disease.

Journal of Clinical Medicine, 13(1).

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