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Characterizing the gut microbiota in females with infertility and preliminary results of a water-soluble dietary fiber intervention study A prebiotic dietary pilot intervention restores faecal metabolites and may be neuroprotective in Parkinson’s Disease Diagnosis of the menopause: NICE guidance and quality standards Causes of Death in End-Stage Kidney Disease: Comparison Between the United States Renal Data System and a Large Integrated Health Care System Factors affecting the absorption and excretion of lead in the rat Factors associated with age at menarche, menstrual knowledge, and hygiene practices among schoolgirls in Sharjah, UAE Cadmium transport in blood serum The non-pathogenic Escherichia coli strain Nissle 1917 – features of a versatile probiotic Structured Exercise Benefits in Euthyroid Graves’ Disease: Improved Capacity, Fatigue, and Relapse Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease A Pilot Microbiota Study in Parkinson’s Disease Patients versus Control Subjects, and Effects of FTY720 and FTY720-Mitoxy Therapies in Parkinsonian and Multiple System Atrophy Mouse Models Dysbiosis of the Saliva Microbiome in Patients With Polycystic Ovary Syndrome Integrated Microbiome and Host Transcriptome Profiles Link Parkinson’s Disease to Blautia Genus: Evidence From Feces, Blood, and Brain Gut microbiota modulation: a narrative review on a novel strategy for prevention and alleviation of ovarian aging Long-term postmenopausal hormone therapy and endometrial cancer

Novel Insights into the Pathogenesis of Inflammatory Bowel Diseases Original paper

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

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December 7, 2025

  • Autoimmune Diseases
    Autoimmune Diseases

    Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

  • Crohn’s Disease
    Crohn’s Disease

    Crohn's disease is a chronic inflammatory condition of the gastrointestinal tract that can cause a wide range of symptoms, including abdominal pain, diarrhea, and fatigue. The exact cause of the disease remains unclear, but it is believed to result from a combination of genetic predisposition and environmental factors. Although there is no cure, ongoing advancements in medical research continue to improve management strategies and quality of life for those affected by Crohn's disease.

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

Last Updated: 2025-12-07

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Divine Aleru

I am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

What was studied?

This paper reviews recent developments in the understanding of Crohn’s Disease (CD), particularly focusing on its pathogenesis and the emerging role of the microbiome in shaping disease outcomes. It also delves into the influence of epigenetics, immune responses, and the interplay between environmental factors and microbial communities. The review synthesizes data on how these factors contribute to the disease’s chronicity and provides insights into potential therapeutic strategies, such as microbiome-targeted treatments.

Who was studied?

The review addresses studies that examine a broad spectrum of individuals affected by Crohn’s Disease, with an emphasis on genetic, environmental, and microbial influences. It considers both pediatric and adult populations, as well as patients with varying phenotypes of CD, such as inflammatory, fistulizing, and stricturing forms. The review highlights how differences in microbiota composition may influence disease severity and response to treatment, particularly in treatment-naïve individuals and those with diverse environmental exposures.

Most important findings

The most significant findings from the review underscore the role of dysbiosis (microbial imbalance) in Crohn’s Disease, notably how reduced microbial diversity and the overgrowth of pathogenic bacteria contribute to the inflammation seen in CD patients. Specific microbiome signatures are now linked with disease severity, and these microbial imbalances may also influence immune system dysregulation. T-helper (Th) cells, particularly Th17, play a central role in driving the inflammation in CD, and microbial interactions may exacerbate this process. The paper also explores the growing evidence of how environmental factors—such as diet, antibiotics, and pollution—can influence the microbiome and contribute to disease onset and progression.

Recent studies also point to the potential for personalized therapies that target the microbiome, such as fecal microbiota transplantation (FMT) or microbiome modulation to restore balance and alleviate symptoms. Furthermore, advancements in multi-omics technologies and single-cell transcriptomics are offering more profound insights into the genetic and immune pathways involved, enabling more targeted and effective therapeutic strategies.

Key implications

The review highlights several key implications for clinical practice. First, a better understanding of microbiome dysbiosis could lead to innovative, non-invasive diagnostic tools that predict disease severity and response to treatment. The evolving microbiome-targeted therapies provide promising avenues for personalized medicine, especially in patients who do not respond to conventional therapies. Moreover, the identification of specific microbial signatures for Crohn’s Disease could lead to novel biomarkers for early diagnosis and for monitoring disease progression in real-time. Finally, the intersection of epigenetics and microbiome alterations opens new paths for preventative strategies, particularly in genetically predisposed populations, emphasizing early-life interventions.

Crohn’s Disease

Crohn's disease is a chronic inflammatory condition of the gastrointestinal tract that can cause a wide range of symptoms, including abdominal pain, diarrhea, and fatigue. The exact cause of the disease remains unclear, but it is believed to result from a combination of genetic predisposition and environmental factors. Although there is no cure, ongoing advancements in medical research continue to improve management strategies and quality of life for those affected by Crohn's disease.

Fecal Microbiota Transplantation (FMT)

Fecal Microbiota Transplantation (FMT) involves transferring fecal bacteria from a healthy donor to a patient to restore microbiome balance.

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