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Microbial dysbiosis in the gut drives systemic autoimmune diseases Original paper

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

December 13, 2025

  • Autoimmune Diseases
    Autoimmune Diseases

    Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

Last Updated: 2025-12-13

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Divine Aleru

I am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

What was studied?

The review article explores the relationship between microbial imbalances (dysbiosis) in the gut and the development of systemic autoimmune diseases. It highlights how dysbiosis in the gastrointestinal tract may trigger or exacerbate diseases such as type 1 diabetes (T1D), multiple sclerosis (MS), rheumatoid arthritis (RA), and systemic lupus erythematosus (SLE). The study examines how changes in the composition of the microbiome influence immune responses, leading to inflammation and autoimmunity. It emphasizes the role of microbial metabolites and the interaction between the gut microbiota and the host’s immune system in modulating immune functions, such as differentiation of T cells and the production of interleukins, which are critical in autoimmune disease pathogenesis.

Who was studied?

This review article synthesizes findings from a broad range of studies, including clinical and preclinical research, focusing on how microbial dysbiosis affects systemic autoimmune diseases. It discusses data from animal models (mice, rats) and human patients with autoimmune conditions. Specific emphasis is placed on the role of microbial species like Prevotella copri, Faecalibacterium prausnitzii, and Lactobacillus species, which influence immune responses either by promoting inflammation or exerting anti-inflammatory effects. The review incorporates findings on the relationship between gut microbial populations and the systemic immune response in diseases like T1D, MS, RA, and SLE.

Most important findings

The review underscores that microbial dysbiosis can drive systemic inflammation by affecting the integrity of the gut barrier, leading to the leakage of microbial metabolites like lipopolysaccharides (LPS) into the bloodstream. These metabolites contribute to immune system sensitization, promoting inflammatory responses. In autoimmune diseases such as T1D, MS, RA, and SLE, specific microbial taxa such as Bacteroides dorei and Prevotella copri have been associated with disease onset or progression. In contrast, beneficial microbes like Faecalibacterium prausnitzii can induce regulatory T cells and produce anti-inflammatory metabolites like butyrate. Furthermore, the review highlights the potential of microbiome-based therapies, including prebiotics, probiotics, and fecal transplants, to modulate immune responses and mitigate autoimmune disease symptoms.

Key implications

The article presents a compelling case for the gut microbiota as a modulator of systemic autoimmune diseases, suggesting that microbial dysbiosis could be a target for therapeutic interventions. Microbial modulation, through diet, lifestyle, or targeted microbiome-based therapies, holds potential for treating or preventing autoimmune diseases. This understanding opens up new avenues for clinical research into microbiome-based biomarkers and personalized treatment approaches for autoimmune conditions. The identification of specific microbial signatures associated with disease progression offers promise for early diagnosis and the development of microbiome-targeted interventions to prevent or manage autoimmune diseases effectively.

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