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Genetic and Epigenetic Etiology of Inflammatory Bowel Disease: An Update Original paper

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

December 13, 2025

  • Autoimmune Diseases
    Autoimmune Diseases

    Autoimmune disease is when the immune system mistakenly attacks the body's tissues, often linked to imbalances in the microbiome, which can disrupt immune regulation and contribute to disease development.

Researched by:

  • Divine Aleru ID
    Divine Aleru

    User avatarI am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

    Read More

Last Updated: 2025-12-13

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

Divine Aleru

I am a biochemist with a deep curiosity for the human microbiome and how it shapes human health, and I enjoy making microbiome science more accessible through research and writing. With 2 years experience in microbiome research, I have curated microbiome studies, analyzed microbial signatures, and now focus on interventions as a Microbiome Signatures and Interventions Research Coordinator.

What was studied?

The study explores the genetic and epigenetic mechanisms underlying Inflammatory Bowel Disease (IBD), including both Crohn’s Disease (CD) and Ulcerative Colitis (UC). The review analyzes various genetic factors and their relationship with IBD, highlighting how genetic predispositions interact with the microbiome and immune system. It also delves into pharmacogenetic aspects, explaining how genetic variations affect responses to treatment, and discusses the emerging role of epigenetic modifications, including DNA methylation and histone modifications, in disease pathogenesis.

Who was studied?

This review synthesizes data from numerous studies involving patients diagnosed with IBD. It includes research on genetic predispositions, epigenetic factors, and microbiome alterations in patients with both UC and CD. The review also references studies conducted on populations with varying genetic backgrounds, particularly focusing on how these genetic factors interact with environmental elements like diet, lifestyle, and microbial exposure, influencing disease onset and progression.

Most important findings

One of the key findings of the review is the identification of several genetic loci associated with IBD, including the NOD2 gene, which plays a crucial role in immune system activation and microbial recognition. Other genes, such as ATG16L1, CARD9, and CLEC7A, are also significantly implicated in the pathogenesis of IBD. These genes are associated with immune response regulation and the handling of gut microbiota, which is crucial in maintaining intestinal homeostasis. The review also highlights the role of epigenetic factors like DNA methylation in modifying the expression of genes related to inflammation and immune responses, influencing the severity of IBD. Furthermore, genetic and microbiome interactions were found to be pivotal in exacerbating the immune response, leading to the chronic inflammation characteristic of IBD.

Key implications

The review underscores the complexity of IBD, suggesting that both genetic and epigenetic factors are involved in the disease’s onset and progression. From a clinical perspective, understanding these genetic predispositions can enhance personalized treatment strategies, improving the effectiveness of drugs by aligning them with patients’ genetic profiles. The microbiome’s involvement also opens new avenues for therapy, including microbiota-based treatments such as fecal microbiota transplantation (FMT). The identification of genetic markers for disease severity and treatment response could pave the way for pharmacogenetic testing, helping clinicians to choose the most appropriate treatments based on a patient’s genetic makeup.

Crohn’s Disease

Crohn's disease is a chronic inflammatory condition of the gastrointestinal tract that can cause a wide range of symptoms, including abdominal pain, diarrhea, and fatigue. The exact cause of the disease remains unclear, but it is believed to result from a combination of genetic predisposition and environmental factors. Although there is no cure, ongoing advancements in medical research continue to improve management strategies and quality of life for those affected by Crohn's disease.

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