microbiome signatures definitions

Reactive oxygen species (ROS) are oxygen-based molecules that act in immune defense and cellular signaling. In the gut, epithelial and immune-cell ROS shape microbial ecology and barrier function. Excess ROS contributes to oxidative stress, inflammation, and permeability changes relevant to microbiome medicine.

Reactive oxygen species (ROS)

Researched by:

  • Dr. Umar ID
    Dr. Umar

    User avatarClinical Pharmacist and Clinical Pharmacy Master’s candidate focused on antibiotic stewardship, AI-driven pharmacy practice, and research that strengthens safe and effective medication use. Experience spans digital health research with Bloomsbury Health (London), pharmacovigilance in patient support programs, and behavioral approaches to mental health care. Published work includes studies on antibiotic use and awareness, AI applications in medicine, postpartum depression management, and patient safety reporting. Developer of an AI-based clinical decision support system designed to enhance antimicrobial stewardship and optimize therapeutic outcomes.

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January 6, 2026

Reactive oxygen species (ROS) are oxygen-based molecules that act in immune defense and cellular signaling. In the gut, epithelial and immune-cell ROS shape microbial ecology and barrier function. Excess ROS contributes to oxidative stress, inflammation, and permeability changes relevant to microbiome medicine.

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Researched by:

  • Dr. Umar ID
    Dr. Umar

    User avatarClinical Pharmacist and Clinical Pharmacy Master’s candidate focused on antibiotic stewardship, AI-driven pharmacy practice, and research that strengthens safe and effective medication use. Experience spans digital health research with Bloomsbury Health (London), pharmacovigilance in patient support programs, and behavioral approaches to mental health care. Published work includes studies on antibiotic use and awareness, AI applications in medicine, postpartum depression management, and patient safety reporting. Developer of an AI-based clinical decision support system designed to enhance antimicrobial stewardship and optimize therapeutic outcomes.

    Read More

Last Updated: 2026-01-06

Microbiome Signatures identifies and validates condition-specific microbiome shifts and interventions to accelerate clinical translation. Our multidisciplinary team supports clinicians, researchers, and innovators in turning microbiome science into actionable medicine.

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Dr. Umar

Clinical Pharmacist and Clinical Pharmacy Master’s candidate focused on antibiotic stewardship, AI-driven pharmacy practice, and research that strengthens safe and effective medication use. Experience spans digital health research with Bloomsbury Health (London), pharmacovigilance in patient support programs, and behavioral approaches to mental health care. Published work includes studies on antibiotic use and awareness, AI applications in medicine, postpartum depression management, and patient safety reporting. Developer of an AI-based clinical decision support system designed to enhance antimicrobial stewardship and optimize therapeutic outcomes.

What reactive oxygen species are

Reactive oxygen species (ROS) are chemically reactive oxygen-containing molecules that include free radicals, such as superoxide, and non-radical oxidants, such as hydrogen peroxide.[1] ROS are continuously generated in human tissues as a normal by-product of aerobic metabolism and as part of immune defense.[2] At physiological levels, ROS act as signaling molecules that regulate cell growth, barrier repair, and immune responses.[3] When ROS production exceeds antioxidant control, oxidative stress develops, which disrupts normal redox signaling and can damage proteins, lipids, and DNA.[4]

Major biological sources of ROS in the gut

In the gastrointestinal tract, ROS arise from multiple sources, including mitochondria, activated neutrophils, macrophages, and epithelial NADPH oxidase enzymes.[5] NADPH oxidases (NOX and DUOX families) are unique in that they exist primarily to generate ROS for host defense and cell signaling, rather than as accidental metabolic by-products.[6] In the gut epithelium, NOX1- and DUOX-derived ROS contribute to barrier homeostasis and antimicrobial defense at the mucosal surface.[7]

ROS as a mediator of host–microbiome interactions

ROS are central to how the host shapes the microbiome and responds to microbes. Epithelial ROS can restrict pathogen growth and influence microbial colonization patterns by creating localized oxidative conditions at the mucosal surface.[8] In a mechanistic mouse study, loss of epithelial NADPH oxidase activity reshaped the gut microbiota. It unexpectedly promoted a compensatory enrichment of hydrogen peroxide–producing commensals that reduced pathogen virulence, illustrating a three-way relationship between host ROS, microbiota adaptation, and infection outcomes.[9] This evidence supports ROS as a microbiome-relevant “host ecology signal,” not simply a marker of damage.[10][11]

However, excessive ROS can also contribute to inflammation and barrier dysfunction. In intestinal inflammation, increased oxidant generation can destabilize tight junction regulation and promote epithelial injury, which increases mucosal exposure to microbial products and can amplify immune activation.[12][13] This creates a clinically important feedback loop in which inflammation increases ROS, and ROS can further worsen barrier integrity and inflammatory signaling.[14][15]

Clinical interpretation in microbiome medicine

In microbiome medicine, ROS-related biology is relevant in inflammatory bowel disease, enteric infection, metabolic inflammation, and conditions associated with barrier impairment.[16][17] Clinically, ROS are not measured as a single “ROS test,” because ROS are short-lived and vary by location and chemistry.[18] Consensus guidance emphasizes that accurate assessment requires measuring specific ROS species or validated downstream oxidative damage products rather than relying on nonspecific probes.[19] For patient care, the most practical approach is integrating inflammation markers, barrier evaluation, and microbiome patterns to infer ROS-driven pathology when clinically supported.[20][21]

Research Feed

Oxidative stress: a concept in redox biology and medicine

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Free Radicals in Health and Disease

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NADPH oxidases and ROS signaling in the gastrointestinal tract

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Defensive mutualism rescues NADPH oxidase inactivation in gut infection
Microbes
Microbes

Microbes are microscopic organisms living in and on the human body, shaping health through digestion, vitamin production, and immune protection. When microbial balance is disrupted, disease can occur. This guide explains the key types of microorganisms—bacteria, viruses, fungi, protozoa, and archaea—along with major examples of pathogenic and beneficial species.

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ROS in gastrointestinal inflammation: Rescue or sabotage

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Guidelines for measuring reactive oxygen species and oxidative damage in cells and in vivo

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Update History

2026-01-06 14:24:25

Reactive oxygen species (ROS) major

published

Microbes

Microbes are microscopic organisms living in and on the human body, shaping health through digestion, vitamin production, and immune protection. When microbial balance is disrupted, disease can occur. This guide explains key microbe types—bacteria, viruses, fungi, protozoa, and archaea—plus major pathogenic and beneficial examples.

References

  1. Oxidative stress: a concept in redox biology and medicine. Sies H.. (Redox Biology. 2015)
  2. Free Radicals in Health and Disease. Dai X, Huang Z, Lyu R.. (MedComm. 2025)
  3. NADPH oxidases and ROS signaling in the gastrointestinal tract. Aviello G, Knaus UG.. (Mucosal Immunol. 2018)
  4. Oxidative stress: a concept in redox biology and medicine. Sies H.. (Redox Biology. 2015)
  5. ROS in gastrointestinal inflammation: Rescue or sabotage?. Aviello G, Knaus UG.. (British Journal of Pharmacology. 2017)
  6. NADPH oxidases and ROS signaling in the gastrointestinal tract. Aviello G, Knaus UG.. (Mucosal Immunol. 2018)
  7. NADPH oxidases and ROS signaling in the gastrointestinal tract. Aviello G, Knaus UG.. (Mucosal Immunol. 2018)
  8. Defensive mutualism rescues NADPH oxidase inactivation in gut infection. Pircalabioru G, Aviello G, Kubica M, et al.. (Cell Host Microbe. 2016)
  9. Defensive mutualism rescues NADPH oxidase inactivation in gut infection. Pircalabioru G, Aviello G, Kubica M, et al.. (Cell Host Microbe. 2016)
  10. NADPH oxidases and ROS signaling in the gastrointestinal tract. Aviello G, Knaus UG.. (Mucosal Immunol. 2018)
  11. Defensive mutualism rescues NADPH oxidase inactivation in gut infection. Pircalabioru G, Aviello G, Kubica M, et al.. (Cell Host Microbe. 2016)
  12. NADPH oxidases and ROS signaling in the gastrointestinal tract. Aviello G, Knaus UG.. (Mucosal Immunol. 2018)
  13. ROS in gastrointestinal inflammation: Rescue or sabotage?. Aviello G, Knaus UG.. (British Journal of Pharmacology. 2017)
  14. NADPH oxidases and ROS signaling in the gastrointestinal tract. Aviello G, Knaus UG.. (Mucosal Immunol. 2018)
  15. ROS in gastrointestinal inflammation: Rescue or sabotage?. Aviello G, Knaus UG.. (British Journal of Pharmacology. 2017)
  16. NADPH oxidases and ROS signaling in the gastrointestinal tract. Aviello G, Knaus UG.. (Mucosal Immunol. 2018)
  17. ROS in gastrointestinal inflammation: Rescue or sabotage?. Aviello G, Knaus UG.. (British Journal of Pharmacology. 2017)
  18. Guidelines for measuring reactive oxygen species and oxidative damage in cells and in vivo. Murphy MP, Bayir H, Belousov V, et al.. (Nat Metab. 2022)
  19. Guidelines for measuring reactive oxygen species and oxidative damage in cells and in vivo. Murphy MP, Bayir H, Belousov V, et al.. (Nat Metab. 2022)
  20. NADPH oxidases and ROS signaling in the gastrointestinal tract. Aviello G, Knaus UG.. (Mucosal Immunol. 2018)
  21. ROS in gastrointestinal inflammation: Rescue or sabotage?. Aviello G, Knaus UG.. (British Journal of Pharmacology. 2017)

Dai X, Huang Z, Lyu R.

Free Radicals in Health and Disease

MedComm. 2025

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Aviello G, Knaus UG.

ROS in gastrointestinal inflammation: Rescue or sabotage?

British Journal of Pharmacology. 2017

Read Review

Pircalabioru G, Aviello G, Kubica M, et al.

Defensive mutualism rescues NADPH oxidase inactivation in gut infection

Cell Host Microbe. 2016

Read Review

Pircalabioru G, Aviello G, Kubica M, et al.

Defensive mutualism rescues NADPH oxidase inactivation in gut infection

Cell Host Microbe. 2016

Read Review

Pircalabioru G, Aviello G, Kubica M, et al.

Defensive mutualism rescues NADPH oxidase inactivation in gut infection

Cell Host Microbe. 2016

Read Review

Aviello G, Knaus UG.

ROS in gastrointestinal inflammation: Rescue or sabotage?

British Journal of Pharmacology. 2017

Read Review

Aviello G, Knaus UG.

ROS in gastrointestinal inflammation: Rescue or sabotage?

British Journal of Pharmacology. 2017

Read Review

Aviello G, Knaus UG.

ROS in gastrointestinal inflammation: Rescue or sabotage?

British Journal of Pharmacology. 2017

Read Review

Aviello G, Knaus UG.

ROS in gastrointestinal inflammation: Rescue or sabotage?

British Journal of Pharmacology. 2017

Read Review
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